Genomicus v100.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000157482 (Cyprinodontoidei)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	490 species
Bilateria	~580 Mya	488 species
Chordata	~550 Mya	484 species
Vertebrata	~550 Mya	480 species
Gnathostomata	~473 Mya	476 species
Euteleostomi	~420 Mya	474 species	647 homologs (oldest homol.)
Actinopterygii	~386 Mya	153 species	336 homologs
Neopterygii	~314 Mya	151 species	334 homologs
Osteoglossocephalai	~267 Mya	149 species	333 homologs
Clupeocephala	~229 Mya	145 species	325 homologs
Euteleosteomorpha	~206 Mya	119 species	257 homologs
Acanthomorphata	~148 Mya	107 species	213 homologs
Euacanthomorphacea	~132 Mya	105 species	211 homologs
Percomorphaceae	~128 Mya	103 species	207 homologs
Percomorphaceae_A	~110 Mya	101 species	205 homologs
Percomorphaceae_B	~128 Mya	95 species	197 homologs
Ovalentaria	~128 Mya	57 species	120 homologs
Ovalentaria_A	~111 Mya	31 species	71 homologs
Atherinomorphae	~93 Mya	27 species	63 homologs
Cyprinodontiformes	~74 Mya	19 species	47 homologs
Cyprinodontoidei	~57 Mya	17 species	45 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here