Root species for ENSSHBG00005005338 (Kakapo) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1720 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 1717 homologs |
Vertebrata | ~550 Mya | 389 species | 1714 homologs (dupl. node) 1584 homologs (dupl. node) 1158 homologs (dupl. node) 423 homologs |
Gnathostomata | ~473 Mya | 385 species | 422 homologs |
Euteleostomi | ~420 Mya | 383 species | 420 homologs |
Sarcopterygii | ~400 Mya | 253 species | 258 homologs |
Tetrapoda | ~359 Mya | 251 species | 256 homologs |
Amniota | ~326 Mya | 247 species | 252 homologs |
Sauria | ~267 Mya | 53 species | 55 homologs |
Archelosauria | ~250 Mya | 37 species | 39 homologs |
Archosauria | ~236 Mya | 27 species | 27 homologs |
Aves | ~111 Mya | 25 species | 25 homologs |
Neognathae | ~105 Mya | 23 species | 23 homologs |
Neognathae_b | ~105 Mya | 13 species | 14 homologs |
Neognathae_c | ~105 Mya | 3 species | 4 homologs |
Kakapo | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'