Root species for ENSGT00950000182974.a.a.a.b.o.a (Archelosauria) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1718 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 1715 homologs |
Vertebrata | ~550 Mya | 389 species | 1712 homologs (dupl. node) 1582 homologs (dupl. node) 1156 homologs (dupl. node) 732 homologs |
Gnathostomata | ~473 Mya | 385 species | 728 homologs (dupl. node) 297 homologs |
Euteleostomi | ~420 Mya | 383 species | 293 homologs |
Sarcopterygii | ~400 Mya | 253 species | 284 homologs |
Tetrapoda | ~359 Mya | 251 species | 280 homologs |
Amniota | ~326 Mya | 247 species | 276 homologs |
Sauria | ~267 Mya | 53 species | 78 homologs |
Archelosauria | ~250 Mya | 37 species | 56 homologs (dupl. node) 27 homologs (dupl. node) 14 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'