Genomicus v94.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00620000087993.a.c (Caprinae)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	261 species
Bilateria	~580 Mya	259 species
Chordata	~550 Mya	255 species	521 homologs (oldest homol.)
Vertebrata	~550 Mya	251 species	517 homologs (dupl. node) 254 homologs
Euteleostomi	~420 Mya	247 species	251 homologs
Sarcopterygii	~400 Mya	151 species	162 homologs
Tetrapoda	~359 Mya	149 species	160 homologs
Amniota	~326 Mya	147 species	158 homologs
Mammalia	~184 Mya	133 species	144 homologs (dupl. node) 127 homologs
Theria	~166 Mya	131 species	126 homologs
Eutheria	~102 Mya	125 species	125 homologs
Boreoeutheria	~95 Mya	116 species	116 homologs
Laurasiatheria	~88 Mya	28 species	28 homologs
Cetartiodactyla	~61 Mya	9 species	9 homologs
Bovidae	~25 Mya	5 species	5 homologs
Caprinae	~9 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here