Root species for PLEKHM3 (ENSVVUG00000011844) (Red fox) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 373 species | |
Bilateria | ~580 Mya | 371 species | |
Chordata | ~550 Mya | 367 species | |
Vertebrata | ~550 Mya | 363 species | |
Gnathostomata | ~473 Mya | 359 species | 365 homologs (oldest homol.) |
Euteleostomi | ~420 Mya | 357 species | 363 homologs |
Sarcopterygii | ~400 Mya | 241 species | 240 homologs |
Tetrapoda | ~359 Mya | 239 species | 238 homologs |
Amniota | ~326 Mya | 237 species | 236 homologs |
Mammalia | ~184 Mya | 169 species | 168 homologs |
Theria | ~166 Mya | 167 species | 166 homologs |
Eutheria | ~102 Mya | 158 species | 158 homologs |
Boreoeutheria | ~95 Mya | 149 species | 149 homologs |
Laurasiatheria | ~88 Mya | 44 species | 44 homologs |
Carnivora | ~56 Mya | 21 species | 21 homologs |
Caniformia | ~44 Mya | 15 species | 15 homologs |
Canidae | ~14 Mya | 5 species | 5 homologs |
Red fox | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'