Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000156613 (Passeriformes_d)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species
Chordata	~550 Mya	344 species
Vertebrata	~550 Mya	340 species	370 homologs (oldest homol.)
Euteleostomi	~420 Mya	336 species	367 homologs
Sarcopterygii	~400 Mya	240 species	253 homologs
Tetrapoda	~359 Mya	238 species	251 homologs
Amniota	~326 Mya	236 species	249 homologs
Sauria	~267 Mya	67 species	75 homologs
Archelosauria	~250 Mya	57 species	63 homologs
Archosauria	~236 Mya	49 species	55 homologs
Aves	~111 Mya	47 species	53 homologs
Neognathae	~105 Mya	37 species	43 homologs
Neognathae_b	~105 Mya	25 species	31 homologs
Passeriformes	~65 Mya	19 species	23 homologs
Passeriformes_b	~65 Mya	15 species	19 homologs
Passeriformes_d	~65 Mya	9 species	11 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here