Root species for ENSGT00940000159220 (Calidris) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 373 species | 393 homologs (oldest homol.) |
Bilateria | ~580 Mya | 371 species | 391 homologs |
Chordata | ~550 Mya | 367 species | 388 homologs |
Vertebrata | ~550 Mya | 363 species | 387 homologs |
Gnathostomata | ~473 Mya | 359 species | 380 homologs |
Euteleostomi | ~420 Mya | 357 species | 378 homologs |
Sarcopterygii | ~400 Mya | 241 species | 235 homologs |
Tetrapoda | ~359 Mya | 239 species | 233 homologs |
Amniota | ~326 Mya | 237 species | 231 homologs |
Sauria | ~267 Mya | 67 species | 67 homologs |
Archelosauria | ~250 Mya | 57 species | 57 homologs |
Archosauria | ~236 Mya | 49 species | 49 homologs |
Aves | ~111 Mya | 47 species | 47 homologs |
Neognathae | ~105 Mya | 37 species | 37 homologs |
Neognathae_b | ~105 Mya | 25 species | 25 homologs |
Neognathae_c | ~105 Mya | 5 species | 5 homologs |
Calidris | ~10 Mya | 3 species | 3 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'