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Genomicus v98.01 Title
Genomicus v98.01 Logo


DYOGEN group

web-code version: 2017-06-13
database version: 98.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for ENSGT00940000159220 (Calidris) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 373 species 393 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 371 species 391 homologs
Chordata Chordata ~550 Mya 367 species 388 homologs
Vertebrata Vertebrata ~550 Mya 363 species 387 homologs
Gnathostomata Gnathostomata ~473 Mya 359 species 380 homologs
Euteleostomi Euteleostomi ~420 Mya 357 species 378 homologs
Sarcopterygii Sarcopterygii ~400 Mya 241 species 235 homologs
Tetrapoda Tetrapoda ~359 Mya 239 species 233 homologs
Amniota Amniota ~326 Mya 237 species 231 homologs
Sauria Sauria ~267 Mya 67 species 67 homologs
Archelosauria Archelosauria ~250 Mya 57 species 57 homologs
Archosauria Archosauria ~236 Mya 49 species 49 homologs
Aves Aves ~111 Mya 47 species 47 homologs
Neognathae Neognathae ~105 Mya 37 species 37 homologs
Neognathae_b Neognathae_b ~105 Mya 25 species 25 homologs
Neognathae_c Neognathae_c ~105 Mya 5 species 5 homologs
Calidris Calidris ~10 Mya 3 species 3 homologs

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'