Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSELUG00000034552 (Northern pike)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	1936 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	1927 homologs
Euteleostomi	~420 Mya	383 species	1926 homologs (dupl. node) 1885 homologs (dupl. node) 1781 homologs
Actinopterygii	~386 Mya	129 species	1780 homologs (dupl. node) 1483 homologs (dupl. node) 1428 homologs
Neopterygii	~314 Mya	127 species	1390 homologs
Osteoglossocephalai	~267 Mya	125 species	1372 homologs
Clupeocephala	~229 Mya	121 species	1344 homologs (dupl. node) 1190 homologs (dupl. node) 620 homologs
Euteleosteomorpha	~206 Mya	101 species	589 homologs
Protacanthopterygii	~127 Mya	13 species	103 homologs
Northern pike	~0 Mya	1 species	32 homologs (dupl. node) 31 homologs (dupl. node) 26 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'