Root species for gstt1b (ENSLCRG00005021293) (Large yellow croaker) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 471 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 468 homologs |
Vertebrata | ~550 Mya | 389 species | 464 homologs |
Gnathostomata | ~473 Mya | 385 species | 456 homologs |
Euteleostomi | ~420 Mya | 383 species | 454 homologs |
Actinopterygii | ~386 Mya | 129 species | 276 homologs |
Neopterygii | ~314 Mya | 127 species | 274 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 270 homologs (dupl. node) 123 homologs |
Clupeocephala | ~229 Mya | 121 species | 117 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 86 homologs |
Acanthomorphata | ~148 Mya | 87 species | 68 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 66 homologs |
Percomorphaceae | ~128 Mya | 83 species | 65 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 64 homologs |
Percomorphaceae_C | ~128 Mya | 35 species | 23 homologs |
Eupercaria | ~110 Mya | 19 species | 13 homologs |
Eupecaria_A | ~110 Mya | 15 species | 12 homologs |
Eupecaria_B | ~110 Mya | 13 species | 11 homologs |
Eupecaria_C | ~110 Mya | 5 species | 6 homologs |
Eupercaria_incertae_sedis | ~99 Mya | 3 species | 4 homologs |
Large yellow croaker | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'