Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for gstt1b (ENSMZEG00005001411) (Zebra mbuna)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	471 homologs (oldest homol.)
Chordata	~550 Mya	393 species	468 homologs
Vertebrata	~550 Mya	389 species	464 homologs
Gnathostomata	~473 Mya	385 species	456 homologs
Euteleostomi	~420 Mya	383 species	454 homologs
Actinopterygii	~386 Mya	129 species	276 homologs
Neopterygii	~314 Mya	127 species	274 homologs
Osteoglossocephalai	~267 Mya	125 species	270 homologs (dupl. node) 123 homologs
Clupeocephala	~229 Mya	121 species	117 homologs
Euteleosteomorpha	~206 Mya	101 species	86 homologs
Acanthomorphata	~148 Mya	87 species	68 homologs
Euacanthomorphacea	~132 Mya	85 species	66 homologs
Percomorphaceae	~128 Mya	83 species	65 homologs
Percomorphaceae_B	~128 Mya	81 species	64 homologs
Ovalentaria	~128 Mya	45 species	39 homologs
Ovalentaria_B	~128 Mya	21 species	19 homologs
Cichlidae	~95 Mya	13 species	18 homologs
Pseudocrenilabrinae	~22 Mya	11 species	16 homologs
Pseudocrenilabrinae_A	~22 Mya	9 species	14 homologs
Haplochromini	~6 Mya	7 species	12 homologs (dupl. node) 6 homologs
Haplochromini_A	~6 Mya	5 species	4 homologs
Haplochromini_B	~5 Mya	3 species	3 homologs
Zebra mbuna	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'