Genomicus v100.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000003768 (Pipridae)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	490 species
Bilateria	~580 Mya	488 species
Chordata	~550 Mya	484 species
Vertebrata	~550 Mya	480 species
Gnathostomata	~473 Mya	476 species
Euteleostomi	~420 Mya	474 species	439 homologs (oldest homol.)
Sarcopterygii	~400 Mya	320 species	297 homologs
Tetrapoda	~359 Mya	318 species	296 homologs
Amniota	~326 Mya	316 species	295 homologs
Sauria	~267 Mya	115 species	99 homologs
Archelosauria	~250 Mya	97 species	84 homologs
Archosauria	~236 Mya	81 species	70 homologs
Aves	~111 Mya	79 species	68 homologs
Neognathae	~105 Mya	67 species	59 homologs
Neognathae_b	~105 Mya	45 species	41 homologs
Passeriformes	~65 Mya	29 species	26 homologs
Pipridae	~6 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here