Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Scyl2 (MGP_SPRETEiJ_G0016537) (spretus) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species 487 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 397 species 485 homologs
Chordata Chordata ~550 Mya 393 species 481 homologs
Vertebrata Vertebrata ~550 Mya 389 species 477 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 468 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 466 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 292 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 290 homologs
Amniota Amniota ~326 Mya 247 species 286 homologs
Mammalia Mammalia ~184 Mya 193 species 230 homologs
Theria Theria ~166 Mya 191 species 228 homologs
Eutheria Eutheria ~102 Mya 181 species 216 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 206 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 130 homologs
Euarchontoglires_A Euarchontoglires_A ~90 Mya 47 species 53 homologs
Glires Glires ~81 Mya 45 species 51 homologs
Rodentia Rodentia ~80 Mya 41 species 47 homologs
Rodentia_B Rodentia_B ~80 Mya 25 species 29 homologs
Myomorpha Myomorpha ~51 Mya 23 species 27 homologs
Muroidea Muroidea ~44 Mya 21 species 25 homologs
Muroidea_A Muroidea_A ~44 Mya 19 species 23 homologs
Murinae Murinae ~20 Mya 11 species 11 homologs
Mus Mus ~7 Mya 9 species 9 homologs
Mus_A Mus_A ~6 Mya 7 species 7 homologs
Mus_B Mus_B ~2 Mya 5 species 5 homologs
Mus_C Mus_C ~2 Mya 3 species 3 homologs
spretus spretus ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'