Root species for th2 (ENSLACG00000012178) (Coelacanth) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1962 homologs (oldest homol. - dupl. node) 1036 homologs (dupl. node) 609 homologs |
Chordata | ~550 Mya | 393 species | 605 homologs |
Vertebrata | ~550 Mya | 389 species | 601 homologs |
Gnathostomata | ~473 Mya | 385 species | 597 homologs (dupl. node) 219 homologs |
Euteleostomi | ~420 Mya | 383 species | 217 homologs |
Sarcopterygii | ~400 Mya | 253 species | 67 homologs |
Coelacanth | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'