Genomicus v92.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00730000114537 (Neognathae)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	181 species
Bilateria	~580 Mya	179 species
Chordata	~550 Mya	175 species
Vertebrata	~550 Mya	171 species
Euteleostomi	~420 Mya	169 species
Sarcopterygii	~400 Mya	147 species
Tetrapoda	~359 Mya	145 species
Amniota	~326 Mya	143 species
Sauria	~267 Mya	13 species
Archelosauria	~250 Mya	11 species
Neognathae	~105 Mya	9 species	6 homologs (oldest homol.)

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here