Root species for ENSSHAG00000003915 (Tasmanian devil) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 373 species | |
Bilateria | ~580 Mya | 371 species | |
Chordata | ~550 Mya | 367 species | |
Vertebrata | ~550 Mya | 363 species | |
Gnathostomata | ~473 Mya | 359 species | |
Euteleostomi | ~420 Mya | 357 species | 454 homologs (oldest homol.) |
Sarcopterygii | ~400 Mya | 241 species | 305 homologs |
Tetrapoda | ~359 Mya | 239 species | 304 homologs |
Amniota | ~326 Mya | 237 species | 303 homologs |
Mammalia | ~184 Mya | 169 species | 295 homologs |
Theria | ~166 Mya | 167 species | 293 homologs |
Marsupialia | ~85 Mya | 8 species | 15 homologs |
Marsupialia_b | ~85 Mya | 6 species | 11 homologs |
Tasmanian devil | ~0 Mya | 1 species | 3 homologs (dupl. node) 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'