Genomicus v98.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for BIN1 (ENSFCAG00000000531) (Cat)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	373 species	1771 homologs (oldest homol. - dupl. node) 1384 homologs
Bilateria	~580 Mya	371 species	1380 homologs
Chordata	~550 Mya	367 species	1376 homologs
Vertebrata	~550 Mya	363 species	1372 homologs (dupl. node) 1336 homologs (dupl. node) 848 homologs (dupl. node) 477 homologs
Gnathostomata	~473 Mya	359 species	471 homologs
Euteleostomi	~420 Mya	357 species	469 homologs
Sarcopterygii	~400 Mya	241 species	241 homologs
Tetrapoda	~359 Mya	239 species	239 homologs
Amniota	~326 Mya	237 species	237 homologs
Mammalia	~184 Mya	169 species	169 homologs
Theria	~166 Mya	167 species	168 homologs
Eutheria	~102 Mya	158 species	160 homologs
Boreoeutheria	~95 Mya	149 species	152 homologs
Laurasiatheria	~88 Mya	44 species	41 homologs
Carnivora	~56 Mya	21 species	20 homologs
Felidae	~15 Mya	5 species	5 homologs
Cat	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here