Genomicus v02.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Fam006216.a (15_Phlebobranchia)		AlignView depth	PhyloView depth
34_Deuterostomia	~10 Mya	33 species	23 homologs (oldest homol.)
30_Chordata	~10 Mya	29 species	20 homologs
28	~10 Mya	27 species	18 homologs
16_Ascidiacea	~10 Mya	17 species	17 homologs (dupl. node) 13 homologs
15_Phlebobranchia	~10 Mya	7 species	7 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'