Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for C1D (ENSCATG00000045336) (Sooty mangabey)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	515 homologs (oldest homol.)
Chordata	~550 Mya	393 species	512 homologs
Vertebrata	~550 Mya	389 species	508 homologs
Gnathostomata	~473 Mya	385 species	505 homologs
Euteleostomi	~420 Mya	383 species	503 homologs
Sarcopterygii	~400 Mya	253 species	357 homologs
Tetrapoda	~359 Mya	251 species	355 homologs
Amniota	~326 Mya	247 species	351 homologs
Mammalia	~184 Mya	193 species	298 homologs
Theria	~166 Mya	191 species	297 homologs
Eutheria	~102 Mya	181 species	286 homologs
Boreoeutheria	~95 Mya	171 species	274 homologs
Euarchontoglires	~90 Mya	95 species	173 homologs
Primates	~83 Mya	47 species	91 homologs
Haplorrhini	~57 Mya	39 species	83 homologs
Simiiformes	~45 Mya	37 species	79 homologs (dupl. node) 43 homologs
Catarrhini	~30 Mya	29 species	38 homologs
Cercopithecidae	~19 Mya	17 species	21 homologs
Cercopithecinae	~13 Mya	13 species	17 homologs
Cercopithecinae_a	~13 Mya	11 species	15 homologs
Cercopithecinae_b	~13 Mya	5 species	5 homologs
Cercopithecinae_d	~13 Mya	3 species	3 homologs
Sooty mangabey	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'