Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for C1D (ENSG00000197223) (Human)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	514 homologs (oldest homol.)
Chordata	~550 Mya	393 species	511 homologs
Vertebrata	~550 Mya	389 species	507 homologs
Gnathostomata	~473 Mya	385 species	504 homologs
Euteleostomi	~420 Mya	383 species	502 homologs
Sarcopterygii	~400 Mya	253 species	356 homologs
Tetrapoda	~359 Mya	251 species	354 homologs
Amniota	~326 Mya	247 species	350 homologs
Mammalia	~184 Mya	193 species	297 homologs
Theria	~166 Mya	191 species	296 homologs
Eutheria	~102 Mya	181 species	285 homologs
Boreoeutheria	~95 Mya	171 species	273 homologs
Euarchontoglires	~90 Mya	95 species	172 homologs
Primates	~83 Mya	47 species	90 homologs
Haplorrhini	~57 Mya	39 species	82 homologs
Simiiformes	~45 Mya	37 species	78 homologs (dupl. node) 42 homologs
Catarrhini	~30 Mya	29 species	37 homologs
Hominoidea	~25 Mya	11 species	15 homologs
Hominidae	~16 Mya	9 species	13 homologs
Homo/Pan/Gorilla group	~9 Mya	7 species	11 homologs (dupl. node) 6 homologs
Homo/Pan group	~5 Mya	5 species	4 homologs
Human	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'