Root species for C1D (ENSUMAG00000021118) (Polar bear) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 515 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 512 homologs |
Vertebrata | ~550 Mya | 389 species | 508 homologs |
Gnathostomata | ~473 Mya | 385 species | 505 homologs |
Euteleostomi | ~420 Mya | 383 species | 503 homologs |
Sarcopterygii | ~400 Mya | 253 species | 357 homologs |
Tetrapoda | ~359 Mya | 251 species | 355 homologs |
Amniota | ~326 Mya | 247 species | 351 homologs |
Mammalia | ~184 Mya | 193 species | 298 homologs |
Theria | ~166 Mya | 191 species | 297 homologs |
Eutheria | ~102 Mya | 181 species | 286 homologs |
Boreoeutheria | ~95 Mya | 171 species | 274 homologs |
Laurasiatheria | ~88 Mya | 75 species | 99 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 96 homologs |
Laurasiatheria_b | ~77 Mya | 33 species | 52 homologs |
Carnivora | ~56 Mya | 23 species | 34 homologs |
Caniformia | ~44 Mya | 15 species | 16 homologs |
Caniformia_b | ~44 Mya | 9 species | 10 homologs |
Ursidae | ~23 Mya | 5 species | 6 homologs |
Ursus | ~6 Mya | 3 species | 4 homologs |
Polar bear | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'