Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00950000183007.b.i.b.a.a.b.b (Testudinoidea)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species
Gnathostomata	~473 Mya	385 species	2376 homologs (oldest homol.)
Euteleostomi	~420 Mya	383 species	2364 homologs (dupl. node) 1261 homologs
Sarcopterygii	~400 Mya	253 species	358 homologs (dupl. node) 275 homologs (dupl. node) 190 homologs
Tetrapoda	~359 Mya	251 species	189 homologs
Amniota	~326 Mya	247 species	188 homologs
Sauria	~267 Mya	53 species	187 homologs (dupl. node) 113 homologs (dupl. node) 63 homologs
Archelosauria	~250 Mya	37 species	62 homologs
Cryptodira	~161 Mya	9 species	61 homologs
Testudinoidea	~80 Mya	7 species	60 homologs (dupl. node) 18 homologs (dupl. node) 3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'