Root species for cnot9 (ENSCCRG00000041798) (Common carp reference) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | 515 homologs (oldest homol.) |
Bilateria | ~580 Mya | 397 species | 513 homologs |
Chordata | ~550 Mya | 393 species | 505 homologs |
Vertebrata | ~550 Mya | 389 species | 499 homologs |
Gnathostomata | ~473 Mya | 385 species | 496 homologs |
Euteleostomi | ~420 Mya | 383 species | 494 homologs |
Actinopterygii | ~386 Mya | 129 species | 217 homologs |
Neopterygii | ~314 Mya | 127 species | 215 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 213 homologs |
Clupeocephala | ~229 Mya | 121 species | 207 homologs |
Otomorpha | ~221 Mya | 19 species | 26 homologs |
Otophysi | ~152 Mya | 15 species | 22 homologs |
Cyprinoidei | ~34 Mya | 7 species | 14 homologs |
Cyprininae | ~34 Mya | 5 species | 12 homologs (dupl. node) 5 homologs |
Cyprininae_a | ~34 Mya | 3 species | 3 homologs |
Common carp reference | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'