Root species for CDKN2D (ENSPLAG00000018442) (Sailfin molly) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | 533 homologs (oldest homol. - dupl. node) 387 homologs |
Gnathostomata | ~473 Mya | 385 species | 384 homologs |
Euteleostomi | ~420 Mya | 383 species | 382 homologs |
Actinopterygii | ~386 Mya | 129 species | 164 homologs |
Neopterygii | ~314 Mya | 127 species | 162 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 158 homologs |
Clupeocephala | ~229 Mya | 121 species | 150 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 131 homologs |
Acanthomorphata | ~148 Mya | 87 species | 101 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 99 homologs |
Percomorphaceae | ~128 Mya | 83 species | 97 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 95 homologs |
Ovalentaria | ~128 Mya | 45 species | 54 homologs |
Atherinomorphae | ~93 Mya | 23 species | 30 homologs |
Cyprinodontiformes | ~74 Mya | 15 species | 22 homologs |
Cyprinodontoidei | ~57 Mya | 11 species | 18 homologs |
Poeciliinae | ~42 Mya | 7 species | 14 homologs |
Poecilia | ~40 Mya | 5 species | 12 homologs |
NAME_6 | ~40 Mya | 3 species | 6 homologs |
Sailfin molly | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'