Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Vdac1 (ENSMOCG00000015495) (Prairie vole)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	2164 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	2160 homologs
Chordata	~550 Mya	393 species	2150 homologs
Vertebrata	~550 Mya	389 species	2146 homologs
Gnathostomata	~473 Mya	385 species	2138 homologs (dupl. node) 2121 homologs (dupl. node) 1349 homologs (dupl. node) 647 homologs
Euteleostomi	~420 Mya	383 species	645 homologs
Sarcopterygii	~400 Mya	253 species	484 homologs
Tetrapoda	~359 Mya	251 species	482 homologs
Amniota	~326 Mya	247 species	476 homologs
Mammalia	~184 Mya	193 species	418 homologs
Theria	~166 Mya	191 species	416 homologs
Eutheria	~102 Mya	181 species	395 homologs
Boreoeutheria	~95 Mya	171 species	385 homologs
Euarchontoglires	~90 Mya	95 species	271 homologs
Euarchontoglires_A	~90 Mya	47 species	82 homologs
Glires	~81 Mya	45 species	80 homologs
Rodentia	~80 Mya	41 species	74 homologs
Rodentia_B	~80 Mya	25 species	40 homologs
Myomorpha	~51 Mya	23 species	38 homologs
Muroidea	~44 Mya	21 species	34 homologs
Muroidea_A	~44 Mya	19 species	32 homologs
Cricetidae	~20 Mya	7 species	17 homologs
Cricetidae_B	~18 Mya	3 species	7 homologs
Prairie vole	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'