Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Vdac1 (ENSMUSG00000020402) (Mouse)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	2165 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	2161 homologs
Chordata	~550 Mya	393 species	2151 homologs
Vertebrata	~550 Mya	389 species	2147 homologs
Gnathostomata	~473 Mya	385 species	2139 homologs (dupl. node) 2122 homologs (dupl. node) 1350 homologs (dupl. node) 648 homologs
Euteleostomi	~420 Mya	383 species	646 homologs
Sarcopterygii	~400 Mya	253 species	485 homologs
Tetrapoda	~359 Mya	251 species	483 homologs
Amniota	~326 Mya	247 species	477 homologs
Mammalia	~184 Mya	193 species	419 homologs
Theria	~166 Mya	191 species	417 homologs
Eutheria	~102 Mya	181 species	396 homologs
Boreoeutheria	~95 Mya	171 species	386 homologs
Euarchontoglires	~90 Mya	95 species	272 homologs
Euarchontoglires_A	~90 Mya	47 species	83 homologs
Glires	~81 Mya	45 species	81 homologs
Rodentia	~80 Mya	41 species	75 homologs
Rodentia_B	~80 Mya	25 species	41 homologs
Myomorpha	~51 Mya	23 species	39 homologs
Muroidea	~44 Mya	21 species	35 homologs
Muroidea_A	~44 Mya	19 species	33 homologs
Murinae	~20 Mya	11 species	14 homologs
Mus	~7 Mya	9 species	8 homologs
Mus_A	~6 Mya	7 species	6 homologs
Mus_B	~2 Mya	5 species	5 homologs
Mouse	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'