Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000159991.e.a (NAME_7)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species
Chordata	~550 Mya	344 species
Vertebrata	~550 Mya	340 species
Euteleostomi	~420 Mya	336 species	456 homologs (oldest homol.)
Neopterygii	~314 Mya	95 species	252 homologs
Osteoglossocephalai	~267 Mya	93 species	250 homologs (dupl. node) 164 homologs (dupl. node) 98 homologs
Clupeocephala	~229 Mya	89 species	97 homologs
Euteleosteomorpha	~206 Mya	81 species	89 homologs
Acanthomorphata	~148 Mya	79 species	87 homologs
Percomorphaceae	~128 Mya	77 species	85 homologs
Percomorphaceae_A	~128 Mya	75 species	83 homologs
Percomorphaceae_B	~128 Mya	73 species	79 homologs
NAME_3	~128 Mya	63 species	69 homologs
Ovalentaria	~111 Mya	49 species	51 homologs
Atherinomorphae	~93 Mya	27 species	25 homologs
Cyprinodontiformes	~74 Mya	19 species	18 homologs
Cyprinodontoidei	~57 Mya	17 species	17 homologs
Poeciliinae	~42 Mya	13 species	14 homologs
Poecilia	~40 Mya	7 species	7 homologs
NAME_6	~40 Mya	5 species	5 homologs
NAME_7	~40 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here