Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for ENSGT00940000153505.a.a.c.a.a.a.b.a.b (Muroidea_A) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species
Vertebrata Vertebrata ~550 Mya 389 species
Gnathostomata Gnathostomata ~473 Mya 385 species
Euteleostomi Euteleostomi ~420 Mya 383 species
Sarcopterygii Sarcopterygii ~400 Mya 253 species
Tetrapoda Tetrapoda ~359 Mya 251 species
Amniota Amniota ~326 Mya 247 species 714 homologs (oldest homol.)
Mammalia Mammalia ~184 Mya 193 species 708 homologs
Theria Theria ~166 Mya 191 species 707 homologs
Eutheria Eutheria ~102 Mya 181 species 706 homologs (dupl. node)
563 homologs (dupl. node)
280 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 279 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 241 homologs
Euarchontoglires_A Euarchontoglires_A ~90 Mya 47 species 213 homologs
Glires Glires ~81 Mya 45 species 212 homologs (dupl. node)
187 homologs (dupl. node)
141 homologs
Rodentia Rodentia ~80 Mya 41 species 138 homologs
Rodentia_B Rodentia_B ~80 Mya 25 species 131 homologs
Myomorpha Myomorpha ~51 Mya 23 species 130 homologs
Muroidea Muroidea ~44 Mya 21 species 129 homologs (dupl. node)
125 homologs (dupl. node)
111 homologs (dupl. node)
79 homologs (dupl. node)
58 homologs (dupl. node)
21 homologs
Muroidea_A Muroidea_A ~44 Mya 19 species 19 homologs

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'