Genomicus v81.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00510000048252 (Tetrapoda)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	128 species
Bilateria	~580 Mya	126 species
Olfactores	~550 Mya	122 species
Craniata	~550 Mya	118 species
Euteleostomi	~420 Mya	116 species	104 homologs (oldest homol.)
Sarcopterygii	~400 Mya	94 species	85 homologs
Tetrapoda	~359 Mya	92 species	83 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here