Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for EEF1G (ENSUPAG00010005012) (Arctic ground squirrel)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	603 homologs (oldest homol.)
Chordata	~550 Mya	393 species	599 homologs
Vertebrata	~550 Mya	389 species	592 homologs
Gnathostomata	~473 Mya	385 species	588 homologs
Euteleostomi	~420 Mya	383 species	586 homologs
Sarcopterygii	~400 Mya	253 species	419 homologs
Tetrapoda	~359 Mya	251 species	415 homologs
Amniota	~326 Mya	247 species	409 homologs
Mammalia	~184 Mya	193 species	360 homologs
Theria	~166 Mya	191 species	358 homologs
Eutheria	~102 Mya	181 species	346 homologs
Boreoeutheria	~95 Mya	171 species	336 homologs (dupl. node) 307 homologs
Euarchontoglires	~90 Mya	95 species	204 homologs
Euarchontoglires_A	~90 Mya	47 species	73 homologs
Glires	~81 Mya	45 species	71 homologs
Rodentia	~80 Mya	41 species	65 homologs
Rodentia_A	~80 Mya	15 species	23 homologs
Sciuridae	~34 Mya	7 species	11 homologs
Marmotini	~7 Mya	5 species	9 homologs
Marmotini_b	~7 Mya	3 species	5 homologs
Arctic ground squirrel	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'