Root species for ENSGT00940000153523.m.a.a.a.a.b.b.b.d (Mustelinae) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | |
Chordata | ~550 Mya | 393 species | |
Vertebrata | ~550 Mya | 389 species | |
Gnathostomata | ~473 Mya | 385 species | |
Euteleostomi | ~420 Mya | 383 species | |
Sarcopterygii | ~400 Mya | 253 species | |
Tetrapoda | ~359 Mya | 251 species | |
Amniota | ~326 Mya | 247 species | |
Mammalia | ~184 Mya | 193 species | |
Theria | ~166 Mya | 191 species | |
Eutheria | ~102 Mya | 181 species | 734 homologs (oldest homol.) |
Boreoeutheria | ~95 Mya | 171 species | 670 homologs |
Laurasiatheria | ~88 Mya | 75 species | 390 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 383 homologs (dupl. node) 341 homologs (dupl. node) 254 homologs (dupl. node) 207 homologs (dupl. node) 190 homologs (dupl. node) 155 homologs (dupl. node) 81 homologs |
Laurasiatheria_b | ~77 Mya | 33 species | 80 homologs |
Carnivora | ~56 Mya | 23 species | 79 homologs (dupl. node) 25 homologs |
Caniformia | ~44 Mya | 15 species | 24 homologs |
Caniformia_b | ~44 Mya | 9 species | 23 homologs (dupl. node) 13 homologs |
Mustelinae | ~8 Mya | 3 species | 5 homologs (dupl. node) 2 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'