Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PAX3 (ENSMMNG00015013451) (Narwhal)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species
Gnathostomata	~473 Mya	385 species	615 homologs (oldest homol.)
Euteleostomi	~420 Mya	383 species	613 homologs
Sarcopterygii	~400 Mya	253 species	262 homologs
Tetrapoda	~359 Mya	251 species	260 homologs
Amniota	~326 Mya	247 species	256 homologs
Mammalia	~184 Mya	193 species	195 homologs
Theria	~166 Mya	191 species	193 homologs
Eutheria	~102 Mya	181 species	183 homologs
Boreoeutheria	~95 Mya	171 species	173 homologs
Laurasiatheria	~88 Mya	75 species	77 homologs
Laurasiatheria_a	~77 Mya	71 species	73 homologs
Artiodactyla	~61 Mya	37 species	37 homologs
Artiodactyla_a	~61 Mya	33 species	33 homologs
Artiodactyla_b	~61 Mya	29 species	29 homologs
Cetacea	~34 Mya	11 species	11 homologs
Odontoceti	~33 Mya	9 species	9 homologs
Odontoceti_a	~33 Mya	7 species	7 homologs
Odontoceti_b	~33 Mya	5 species	5 homologs
Monodontidae	~7 Mya	3 species	3 homologs
Narwhal	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'