GenomicusPlants v41.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for EPlGT00750000072963 (NAME_6)		AlignView depth	PhyloView depth
Eukaryota	~10 Mya	114 species
Viridiplantae	~10 Mya	99 species
Embryophyta	~10 Mya	95 species
Tracheophyta	~10 Mya	93 species
Magnoliophyta	~10 Mya	91 species
Mesangiospermae	~10 Mya	89 species
Petrosaviidae	~10 Mya	45 species
commelinids	~10 Mya	43 species
Poaceae	~10 Mya	41 species
BOP_clade	~10 Mya	35 species
Oryzinae	~10 Mya	21 species
Oryza	~10 Mya	19 species
NAME_4	~10 Mya	17 species
NAME_5	~10 Mya	15 species	11 homologs (oldest homol.)
NAME_6	~10 Mya	11 species	9 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here