Genomicus v102.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for GSK3B (ENSPLOG00000014540) (lion)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	534 species	1363 homologs (oldest homol.)
Bilateria	~580 Mya	532 species	1357 homologs
Chordata	~550 Mya	528 species	1349 homologs
Vertebrata	~550 Mya	524 species	1345 homologs
Gnathostomata	~473 Mya	520 species	1342 homologs (dupl. node) 1318 homologs (dupl. node) 670 homologs
Euteleostomi	~420 Mya	518 species	668 homologs (dupl. node) 617 homologs
Sarcopterygii	~400 Mya	356 species	369 homologs
Tetrapoda	~359 Mya	354 species	367 homologs
Amniota	~326 Mya	350 species	363 homologs
Mammalia	~184 Mya	212 species	212 homologs
Theria	~166 Mya	210 species	210 homologs
Eutheria	~102 Mya	200 species	198 homologs
Boreoeutheria	~95 Mya	190 species	188 homologs
Laurasiatheria	~88 Mya	81 species	81 homologs
Laurasiatheria_a	~77 Mya	77 species	77 homologs
Laurasiatheria_b	~77 Mya	41 species	41 homologs
Carnivora	~56 Mya	31 species	31 homologs
Feliformia	~40 Mya	11 species	11 homologs
Felidae	~15 Mya	9 species	9 homologs
Panthera	~7 Mya	5 species	5 homologs
Panthera_a	~7 Mya	3 species	3 homologs
lion	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here