Genomicus v98.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000016233.o.b (NAME_11)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	373 species	540 homologs (oldest homol.)
Bilateria	~580 Mya	371 species	538 homologs
Chordata	~550 Mya	367 species	534 homologs
Vertebrata	~550 Mya	363 species	530 homologs
Gnathostomata	~473 Mya	359 species	524 homologs
Euteleostomi	~420 Mya	357 species	520 homologs
Actinopterigyii	~386 Mya	115 species	263 homologs
Neopterygii	~314 Mya	113 species	261 homologs
Osteoglossocephalai	~267 Mya	111 species	259 homologs (dupl. node) 204 homologs (dupl. node) 96 homologs
Clupeocephala	~229 Mya	107 species	88 homologs
Euteleosteomorpha	~206 Mya	93 species	87 homologs
Acanthomorphata	~148 Mya	89 species	86 homologs
Percomorphaceae	~128 Mya	87 species	85 homologs
Percomorphaceae_A	~128 Mya	85 species	83 homologs
Percomorphaceae_B	~128 Mya	83 species	81 homologs
Ovalentaria	~128 Mya	69 species	67 homologs
Ovalentaria_A	~111 Mya	52 species	50 homologs
NAME_9	~128 Mya	23 species	23 homologs
Cichlidae	~95 Mya	13 species	13 homologs
Pseudocrenilabrinae	~22 Mya	11 species	11 homologs
NAME_10	~22 Mya	9 species	9 homologs
Haplochromini	~6 Mya	7 species	7 homologs
NAME_11	~6 Mya	5 species	5 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here