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Root species for Clint1 (ENSPEMG00000022779) (Northern American deer mouse) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
610 homologs (oldest homol.) ![]() |
Chordata | ![]() |
393 species ![]() |
607 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
606 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
602 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
600 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
266 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
264 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
260 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
204 homologs ![]() |
Theria | ![]() |
191 species ![]() |
202 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
192 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
183 homologs ![]() |
Euarchontoglires | ![]() |
95 species ![]() |
106 homologs ![]() |
Euarchontoglires_A | ![]() |
47 species ![]() |
59 homologs ![]() |
Glires | ![]() |
45 species ![]() |
58 homologs ![]() |
Rodentia | ![]() |
41 species ![]() |
54 homologs ![]() |
Rodentia_B | ![]() |
25 species ![]() |
27 homologs ![]() |
Myomorpha | ![]() |
23 species ![]() |
25 homologs ![]() |
Muroidea | ![]() |
21 species ![]() |
21 homologs ![]() |
Muroidea_A | ![]() |
19 species ![]() |
19 homologs ![]() |
Cricetidae | ![]() |
7 species ![]() |
7 homologs ![]() |
Cricetidae_B | ![]() |
3 species ![]() |
3 homologs ![]() |
Northern American deer mouse | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'