Root species for TUBA4B (ENSOSIG00000016069) (Chinese medaka) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 923 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 920 homologs |
Vertebrata | ~550 Mya | 389 species | 919 homologs |
Gnathostomata | ~473 Mya | 385 species | 918 homologs (dupl. node) 657 homologs (dupl. node) 445 homologs |
Euteleostomi | ~420 Mya | 383 species | 444 homologs |
Actinopterygii | ~386 Mya | 129 species | 241 homologs |
Neopterygii | ~314 Mya | 127 species | 240 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 239 homologs |
Clupeocephala | ~229 Mya | 121 species | 238 homologs (dupl. node) 58 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 53 homologs |
Acanthomorphata | ~148 Mya | 87 species | 43 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 42 homologs |
Percomorphaceae | ~128 Mya | 83 species | 41 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 40 homologs |
Ovalentaria | ~128 Mya | 45 species | 25 homologs |
Atherinomorphae | ~93 Mya | 23 species | 15 homologs |
Oryzias | ~10 Mya | 7 species | 5 homologs |
Oryzias_a | ~10 Mya | 3 species | 4 homologs |
Chinese medaka | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'