Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for HK1 (ENSCATG00000045218) (Sooty mangabey) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species 2313 homologs (oldest homol. - dupl. node)
518 homologs
Bilateria Bilateria ~580 Mya 397 species 516 homologs
Chordata Chordata ~550 Mya 393 species 515 homologs
Vertebrata Vertebrata ~550 Mya 389 species 514 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 513 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 512 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 255 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 253 homologs
Amniota Amniota ~326 Mya 247 species 249 homologs
Mammalia Mammalia ~184 Mya 193 species 197 homologs
Theria Theria ~166 Mya 191 species 195 homologs
Eutheria Eutheria ~102 Mya 181 species 185 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 175 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 97 homologs
Primates Primates ~83 Mya 47 species 50 homologs
Haplorrhini Haplorrhini ~57 Mya 39 species 42 homologs
Simiiformes Simiiformes ~45 Mya 37 species 40 homologs
Catarrhini Catarrhini ~30 Mya 29 species 29 homologs
Cercopithecidae Cercopithecidae ~19 Mya 17 species 17 homologs
Cercopithecinae Cercopithecinae ~13 Mya 13 species 13 homologs
Cercopithecinae_a Cercopithecinae_a ~13 Mya 11 species 11 homologs
Cercopithecinae_b Cercopithecinae_b ~13 Mya 5 species 5 homologs
Cercopithecinae_d Cercopithecinae_d ~13 Mya 3 species 3 homologs
Sooty mangabey Sooty mangabey ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'