Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000154369.g.b (Haplochromini_B)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	778 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	771 homologs
Euteleostomi	~420 Mya	383 species	769 homologs
Actinopterygii	~386 Mya	129 species	328 homologs
Neopterygii	~314 Mya	127 species	326 homologs
Osteoglossocephalai	~267 Mya	125 species	324 homologs (dupl. node) 292 homologs (dupl. node) 148 homologs
Clupeocephala	~229 Mya	121 species	145 homologs
Euteleosteomorpha	~206 Mya	101 species	113 homologs
Acanthomorphata	~148 Mya	87 species	87 homologs
Euacanthomorphacea	~132 Mya	85 species	85 homologs
Percomorphaceae	~128 Mya	83 species	83 homologs
Percomorphaceae_B	~128 Mya	81 species	81 homologs
Ovalentaria	~128 Mya	45 species	45 homologs
Ovalentaria_B	~128 Mya	21 species	21 homologs
Cichlidae	~95 Mya	13 species	13 homologs
Pseudocrenilabrinae	~22 Mya	11 species	11 homologs
Pseudocrenilabrinae_A	~22 Mya	9 species	9 homologs
Haplochromini	~6 Mya	7 species	7 homologs
Haplochromini_A	~6 Mya	5 species	5 homologs
Haplochromini_B	~5 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'