Genomicus v98.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for DSC1 (ENSCANG00000025060) (Angola colobus)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	373 species
Bilateria	~580 Mya	371 species
Chordata	~550 Mya	367 species
Vertebrata	~550 Mya	363 species	2082 homologs (oldest homol.)
Gnathostomata	~473 Mya	359 species	2051 homologs (dupl. node) 706 homologs
Euteleostomi	~420 Mya	357 species	704 homologs
Sarcopterygii	~400 Mya	241 species	571 homologs
Tetrapoda	~359 Mya	239 species	569 homologs
Amniota	~326 Mya	237 species	567 homologs
Mammalia	~184 Mya	169 species	490 homologs (dupl. node) 164 homologs
Theria	~166 Mya	167 species	162 homologs
Eutheria	~102 Mya	158 species	155 homologs
Boreoeutheria	~95 Mya	149 species	146 homologs
Euarchontoglires	~90 Mya	104 species	102 homologs
Primates	~83 Mya	45 species	43 homologs
Haplorrhini	~57 Mya	38 species	36 homologs
Simiiformes	~45 Mya	36 species	34 homologs
Catarrhini	~30 Mya	29 species	29 homologs
Cercopithecidae	~19 Mya	17 species	17 homologs
Colobinae	~14 Mya	6 species	6 homologs
Angola colobus	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here