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Root species for trmt2a (ENSPNYG00000004441) (P. nyererei) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
757 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
755 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
751 homologs (dupl. node) ![]() 400 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
399 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
396 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
394 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
144 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
142 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
140 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
136 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
110 homologs ![]() |
Acanthomorphata | ![]() |
87 species ![]() |
87 homologs ![]() |
Euacanthomorphacea | ![]() |
85 species ![]() |
85 homologs ![]() |
Percomorphaceae | ![]() |
83 species ![]() |
83 homologs ![]() |
Percomorphaceae_B | ![]() |
81 species ![]() |
81 homologs ![]() |
Ovalentaria | ![]() |
45 species ![]() |
45 homologs ![]() |
Ovalentaria_B | ![]() |
21 species ![]() |
21 homologs ![]() |
Cichlidae | ![]() |
13 species ![]() |
13 homologs ![]() |
Pseudocrenilabrinae | ![]() |
11 species ![]() |
11 homologs ![]() |
Pseudocrenilabrinae_A | ![]() |
9 species ![]() |
9 homologs ![]() |
Haplochromini | ![]() |
7 species ![]() |
7 homologs ![]() |
Haplochromini_A | ![]() |
5 species ![]() |
5 homologs ![]() |
P. nyererei | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'