Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for AHNAK (ENSMZEG00005003667) (Zebra mbuna)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	782 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	771 homologs
Euteleostomi	~420 Mya	383 species	762 homologs
Actinopterygii	~386 Mya	129 species	324 homologs
Neopterygii	~314 Mya	127 species	319 homologs
Osteoglossocephalai	~267 Mya	125 species	314 homologs
Clupeocephala	~229 Mya	121 species	305 homologs
Euteleosteomorpha	~206 Mya	101 species	260 homologs
Acanthomorphata	~148 Mya	87 species	182 homologs
Euacanthomorphacea	~132 Mya	85 species	180 homologs
Percomorphaceae	~128 Mya	83 species	178 homologs
Percomorphaceae_B	~128 Mya	81 species	172 homologs
Ovalentaria	~128 Mya	45 species	92 homologs
Ovalentaria_B	~128 Mya	21 species	47 homologs
Cichlidae	~95 Mya	13 species	32 homologs
Pseudocrenilabrinae	~22 Mya	11 species	27 homologs
Pseudocrenilabrinae_A	~22 Mya	9 species	23 homologs
Haplochromini	~6 Mya	7 species	18 homologs
Haplochromini_A	~6 Mya	5 species	16 homologs
Haplochromini_B	~5 Mya	3 species	12 homologs
Zebra mbuna	~0 Mya	1 species	7 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'