Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for AHNAK (ENSPMRG00000018207) (Common wall lizard)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	782 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	771 homologs
Euteleostomi	~420 Mya	383 species	762 homologs
Sarcopterygii	~400 Mya	253 species	436 homologs
Tetrapoda	~359 Mya	251 species	431 homologs
Amniota	~326 Mya	247 species	425 homologs
Sauria	~267 Mya	53 species	99 homologs
Lepidosauria	~251 Mya	15 species	32 homologs
Episquamata	~178 Mya	13 species	28 homologs
Laterata	~148 Mya	3 species	6 homologs
Common wall lizard	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'