Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for AHNAK (ENSACCG00020011218) (Golden eagle)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	783 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	772 homologs
Euteleostomi	~420 Mya	383 species	763 homologs
Sarcopterygii	~400 Mya	253 species	437 homologs
Tetrapoda	~359 Mya	251 species	432 homologs
Amniota	~326 Mya	247 species	426 homologs
Sauria	~267 Mya	53 species	100 homologs
Archelosauria	~250 Mya	37 species	66 homologs
Archosauria	~236 Mya	27 species	41 homologs
Aves	~111 Mya	25 species	39 homologs
Neognathae	~105 Mya	23 species	37 homologs
Neognathae_b	~105 Mya	13 species	15 homologs
Neognathae_c	~105 Mya	3 species	3 homologs
Golden eagle	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'