Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for NRXN1 (ENSSSAG00000004275) (Atlantic salmon)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species	812 homologs (oldest homol.)
Vertebrata	~550 Mya	389 species	809 homologs (dupl. node) 793 homologs (dupl. node) 651 homologs
Gnathostomata	~473 Mya	385 species	648 homologs
Euteleostomi	~420 Mya	383 species	642 homologs
Actinopterygii	~386 Mya	129 species	242 homologs
Neopterygii	~314 Mya	127 species	237 homologs
Osteoglossocephalai	~267 Mya	125 species	235 homologs
Clupeocephala	~229 Mya	121 species	226 homologs
Euteleosteomorpha	~206 Mya	101 species	168 homologs (dupl. node) 139 homologs
Protacanthopterygii	~127 Mya	13 species	40 homologs
Salmoninae	~48 Mya	11 species	38 homologs (dupl. node) 36 homologs (dupl. node) 26 homologs (dupl. node) 15 homologs
Salmoninae_a	~48 Mya	9 species	9 homologs
Salmo	~12 Mya	3 species	3 homologs
Atlantic salmon	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'