Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPL13A (ENSLLTG00000006184) (Blue-lipped sea krait)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	1010 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	1006 homologs
Chordata	~550 Mya	393 species	1002 homologs
Vertebrata	~550 Mya	389 species	998 homologs
Gnathostomata	~473 Mya	385 species	994 homologs
Euteleostomi	~420 Mya	383 species	992 homologs
Sarcopterygii	~400 Mya	253 species	830 homologs
Tetrapoda	~359 Mya	251 species	828 homologs
Amniota	~326 Mya	247 species	818 homologs
Sauria	~267 Mya	53 species	47 homologs
Lepidosauria	~251 Mya	15 species	23 homologs
Episquamata	~178 Mya	13 species	21 homologs
Toxicofera	~168 Mya	9 species	15 homologs
Elapidae	~32 Mya	7 species	13 homologs (dupl. node) 7 homologs
Elapidae_a	~32 Mya	5 species	5 homologs
Blue-lipped sea krait	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'