Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for KARS1 (ENSOARG00020020380) (Rambouillet Sheep)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	2265 homologs (oldest homol. - dupl. node) 940 homologs (dupl. node) 927 homologs (dupl. node) 482 homologs
Bilateria	~580 Mya	397 species	478 homologs
Chordata	~550 Mya	393 species	474 homologs
Vertebrata	~550 Mya	389 species	468 homologs
Gnathostomata	~473 Mya	385 species	464 homologs
Euteleostomi	~420 Mya	383 species	462 homologs
Sarcopterygii	~400 Mya	253 species	304 homologs
Tetrapoda	~359 Mya	251 species	300 homologs
Amniota	~326 Mya	247 species	294 homologs
Mammalia	~184 Mya	193 species	222 homologs
Theria	~166 Mya	191 species	220 homologs
Eutheria	~102 Mya	181 species	201 homologs
Boreoeutheria	~95 Mya	171 species	191 homologs
Laurasiatheria	~88 Mya	75 species	80 homologs
Laurasiatheria_a	~77 Mya	71 species	76 homologs
Artiodactyla	~61 Mya	37 species	40 homologs
Artiodactyla_a	~61 Mya	33 species	36 homologs
Artiodactyla_b	~61 Mya	29 species	32 homologs
Pecora	~27 Mya	17 species	18 homologs
Percora_a	~27 Mya	15 species	16 homologs
Bovidae	~25 Mya	13 species	14 homologs
Caprinae	~9 Mya	3 species	5 homologs
Rambouillet Sheep	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'