Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPS3A (ENSECAG00000009573) (Horse)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	981 homologs (oldest homol.)
Chordata	~550 Mya	393 species	977 homologs
Vertebrata	~550 Mya	389 species	973 homologs
Gnathostomata	~473 Mya	385 species	969 homologs
Euteleostomi	~420 Mya	383 species	967 homologs
Sarcopterygii	~400 Mya	253 species	803 homologs
Tetrapoda	~359 Mya	251 species	801 homologs
Amniota	~326 Mya	247 species	797 homologs
Mammalia	~184 Mya	193 species	737 homologs
Theria	~166 Mya	191 species	733 homologs
Eutheria	~102 Mya	181 species	721 homologs (dupl. node) 615 homologs (dupl. node) 240 homologs
Boreoeutheria	~95 Mya	171 species	226 homologs
Laurasiatheria	~88 Mya	75 species	82 homologs
Laurasiatheria_a	~77 Mya	71 species	79 homologs
Laurasiatheria_b	~77 Mya	33 species	35 homologs
Laurasiatheria_c	~77 Mya	9 species	8 homologs
Equus	~7 Mya	3 species	3 homologs
Horse	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'