Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPS3A (ENSHGLG00000000392) (Naked mole-rat female)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	980 homologs (oldest homol.)
Chordata	~550 Mya	393 species	976 homologs
Vertebrata	~550 Mya	389 species	972 homologs
Gnathostomata	~473 Mya	385 species	968 homologs
Euteleostomi	~420 Mya	383 species	966 homologs
Sarcopterygii	~400 Mya	253 species	802 homologs
Tetrapoda	~359 Mya	251 species	800 homologs
Amniota	~326 Mya	247 species	796 homologs
Mammalia	~184 Mya	193 species	736 homologs
Theria	~166 Mya	191 species	732 homologs
Eutheria	~102 Mya	181 species	720 homologs (dupl. node) 614 homologs (dupl. node) 239 homologs
Boreoeutheria	~95 Mya	171 species	225 homologs
Euarchontoglires	~90 Mya	95 species	142 homologs
Euarchontoglires_A	~90 Mya	47 species	73 homologs
Glires	~81 Mya	45 species	69 homologs
Rodentia	~80 Mya	41 species	61 homologs
Rodentia_A	~80 Mya	15 species	23 homologs
Hystricomorpha	~42 Mya	7 species	13 homologs
Naked mole-rat female	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'