GenomicusMetazoa v51.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for EMGT00950000188771.a.a.a.a.a.b (Myrmicinae)	AlignView depth	PhyloView depth
Metazoa	198 species	223 homologs (oldest homol.)
Eumetazoa	196 species	221 homologs (dupl. node) 217 homologs (dupl. node) 209 homologs (dupl. node) 200 homologs (dupl. node) 197 homologs (dupl. node) 164 homologs
Bilateria	187 species	163 homologs
Protostomia	182 species	162 homologs
Ecdysozoa	167 species	150 homologs
Arthropoda	150 species	149 homologs
Mandibulata	134 species	140 homologs
Pancrustacea	132 species	138 homologs
Hexapoda	124 species	133 homologs
Neoptera	120 species	129 homologs (dupl. node) 18 homologs
Holometabola	109 species	12 homologs
Apocrita	11 species	11 homologs
Aculeata	9 species	9 homologs
Myrmicinae	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'