Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for NOG (ENSSBOG00000006250) (Bolivian squirrel monkey) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species 959 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 389 species 955 homologs (dupl. node)
775 homologs (dupl. node)
772 homologs (dupl. node)
533 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 532 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 530 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 236 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 234 homologs
Amniota Amniota ~326 Mya 247 species 230 homologs
Mammalia Mammalia ~184 Mya 193 species 180 homologs
Theria Theria ~166 Mya 191 species 179 homologs
Eutheria Eutheria ~102 Mya 181 species 170 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 162 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 91 homologs
Primates Primates ~83 Mya 47 species 45 homologs
Haplorrhini Haplorrhini ~57 Mya 39 species 37 homologs
Simiiformes Simiiformes ~45 Mya 37 species 35 homologs
Platyrrhini Platyrrhini ~18 Mya 7 species 7 homologs
Cebidae Cebidae ~18 Mya 5 species 5 homologs
Cebidae_a Cebidae_a ~18 Mya 3 species 3 homologs
Bolivian squirrel monkey Bolivian squirrel monkey ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'